Stemformatics: Visualisation and sharing of stem cell gene expression
- Author(s)
- Wells, CA; Mosbergen, R; Korn, O; Choi, J; Seidenman, N; Matigian, NA; Vitale, AM; Shepherd, J;
- Details
- Publication Year 2013-05,Volume 10,Issue #3,Page 387-395
- Journal Title
- STEM CELL RESEARCH
- Publication Type
- Journal Article
- Abstract
- Genome-scale technologies are increasingly adopted by the stem cell research community, because of the potential to uncover the molecular events most informative about a stem cell state. These technologies also present enormous challenges around the sharing and visualisation of data derived from different laboratories or under different experimental conditions. Stemformatics is an easy to use, publicly accessible portal that hosts a large collection of exemplar stem cell data. It provides fast visualisation of gene expression across a range of mouse and human datasets, with transparent links back to the original studies. One difficulty in the analysis of stem cell signatures is the paucity of public pathways/gene lists relevant to stem cell or developmental biology. Stemformatics provides a simple mechanism to create, share and analyse gene sets, providing a repository of community-annotated stem cell gene lists that are informative about pathways, lineage commitment, and common technical artefacts. Stemformatics can be accessed at stemformatics.org. Crown Copyright (C) 2012 Published by Elsevier B.V. All rights reserved.
- Publisher
- ELSEVIER SCIENCE BV
- Keywords
- DATABASE; PLURIPOTENCY; DIFFERENTIATION; COMMITMENT; STATES; LINES; KEGG
- Research Division(s)
- Molecular Medicine
- Publisher's Version
- https://doi.org/10.1016/j.scr.2012.12.003
- Terms of Use/Rights Notice
- Crown copyright © 2012 Published by Elsevier B.V. All rights reserved.
Creation Date: 2013-05-01 12:00:00