Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer

Valdes-Mora, F; Song, JZ; Statham, AL; Strbenac, D; Robinson, MD; Nair, SS; Patterson, KI; Tremethick, DJ; Stirzaker, C; Clark, SJ

Author(s): Valdes-Mora, F; Song, JZ; Statham, AL; Strbenac, D; Robinson, MD; Nair, SS; Patterson, KI; Tremethick, DJ; Stirzaker, C; Clark, SJ;
Details: Publication Year 2012-02,Volume 22,Issue #2,Page 307-321
Journal Title: GENOME RESEARCH
Publication Type: Journal Article
Abstract: Histone H2A.Z (H2A.Z) is an evolutionarily conserved H2A variant implicated in the regulation of gene expression; however, its role in transcriptional deregulation in cancer remains poorly understood. Using genome-wide studies, we investigated the role of promoter-associated H2A.Z and acetylated H2A.Z (acH2A.Z) in gene deregulation and its relationship with DNA methylation and H3K27me3 in prostate cancer. Our results reconcile the conflicting reports of positive and negative roles for histone H2A.Z and gene expression states. We find that H2A.Z is enriched in a bimodal distribution at nucleosomes, surrounding the transcription start sites (TSSs) of both active and poised gene promoters. In addition, H2A.Z spreads across the entire promoter of inactive genes in a deacetylated state. In contrast, acH2A.Z is only localized at the TSSs of active genes. Gene deregulation in cancer is also associated with a reorganization of acH2A.Z and H2A.Z nucleosome occupancy across the promoter region and TSS of genes. Notably, in cancer cells we find that a gain of acH2A.Z at the TSS occurs with an overall decrease of H2A.Z levels, in concert with oncogene activation. Furthermore, deacetylation of H2A.Z at TSSs is increased with silencing of tumor suppressor genes. We also demonstrate that acH2A.Z anti-correlates with promoter H3K27me3 and DNA methylation. We show for the first time, that acetylation of H2A.Z is a key modification associated with gene activity in normal cells and epigenetic gene deregulation in tumorigenesis.
Publisher: COLD SPRING HARBOR LAB PRESS, PUBLICATIONS DEPT
Keywords: HISTONE VARIANT H2A.Z; EARLY MAMMALIAN DEVELOPMENT; DNA METHYLATION; ACTIVE GENES; HUMAN GENOME; CHROMATIN; NUCLEOSOME; HETEROCHROMATIN; TRANSCRIPTION; COMPLEX
Research Division(s): Bioinformatics
Link To PubMed Central Version: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266038/
Publisher's Version: https://doi.org/10.1101/gr.118919.110

Creation Date: 2012-02-01 12:00:00