Cpipe: a shared variant detection pipeline designed for diagnostic settings
Details
Publication Year 2015, Volume 7, Issue #1, Page 68
Journal Title
Genome Medicine
Publication Type
Journal Article
Abstract
The benefits of implementing high throughput sequencing in the clinic are quickly becoming apparent. However, few freely available bioinformatics pipelines have been built from the ground up with clinical genomics in mind. Here we present Cpipe, a pipeline designed specifically for clinical genetic disease diagnostics. Cpipe was developed by the Melbourne Genomics Health Alliance, an Australian initiative to promote common approaches to genomics across healthcare institutions. As such, Cpipe has been designed to provide fast, effective and reproducible analysis, while also being highly flexible and customisable to meet the individual needs of diverse clinical settings. Cpipe is being shared with the clinical sequencing community as an open source project and is available at http://cpipeline.org.
Publisher
BioMed Central
WEHI Research Division(s)
Population Health And Immunity
PubMed ID
26217397
Open Access at Publisher's Site
http://www.genomemedicine.com/content/7/1/68
ARC Grants
ARC/FT100100764,
Rights Notice
Refer to copyright notice on published article.


Creation Date: 2015-09-01 03:55:21
Last Modified: 2019-04-01 09:15:11
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