Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt
- Author(s)
- Romijn, LB; Almet, AA; Tan, CW; Osborne, JM;
- Details
- Publication Year 2020-03-03,Volume 21,Issue #1,Page 95
- Journal Title
- BMC Bioinformatics
- Publication Type
- Journal Article
- Abstract
- BACKGROUND: Many cancers arise from mutations in cells within epithelial tissues. Mutations manifesting at the subcellular level influence the structure and function of the tissue resulting in cancer. Previous work has proposed how cell level properties can lead to mutant cell invasion, but has not incorporated detailed subcellular modelling RESULTS: We present a framework that allows the straightforward integration and simulation of SBML representations of subcellular dynamics within multiscale models of epithelial tissues. This allows us to investigate the effect of mutations in subcellular pathways on the migration of cells within the colorectal crypt. Using multiple models we find that mutations in APC, a key component in the Wnt signalling pathway, can bias neutral drift and can also cause downward invasion of mutant cells in the crypt. CONCLUSIONS: Our framework allows us to investigate how subcellular mutations, i.e. knockouts and knockdowns, affect cell-level properties and the resultant migration of cells within epithelial tissues. In the context of the colorectal crypt, we see that mutations in APC can lead directly to mutant cell invasion.
- Publisher
- BMC
- Research Division(s)
- Personalised Oncology
- PubMed ID
- 32126976
- Publisher's Version
- https://doi.org/10.1186/s12859-020-3391-3
- Open Access at Publisher's Site
https://doi.org/10.1186/s12859-020-3391-3- Terms of Use/Rights Notice
- Refer to copyright notice on published article.
Creation Date: 2020-03-24 01:39:43
Last Modified: 2020-03-24 02:26:16