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Showing results for: AUTHOR - Chen, Y

Found: 22 results

Calling differentially methylated regions from whole genome bisulphite sequencing with DMRcate Nucleic Acids Research - 2021-07-28 Peters, TJ; Buckley, MJ; Chen, Y; Smyth, GK; Goodnow, CC; Clark, SJ
Abstract
Single cell transcriptome atlas of mouse mammary epithelial cells across development Breast Cancer Research - 2021-06-29 Pal, B; Chen, Y; Milevskiy, MJG; Vaillant, F; Prokopuk, L; Dawson, CA; Capaldo, BD; Song, X; Jackling, F; Timpson, P; Lindeman, GJ; Smyth, GK; Visvader, JE
Abstract
A single-cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast EMBO Journal - 2021-05-05 Pal, B; Chen, Y; Vaillant, F; Capaldo, BD; Joyce, R; Song, X; Bryant, VL; Penington, JS; Di Stefano, L; Tubau Ribera, N; Wilcox, S; Mann, GB; kConFab Investigators,; Papenfuss, AT; Lindeman, GJ; Smyth, GK; Visvader, JE
Abstract
Intraclonal plasticity in mammary tumors revealed through large-scale single-cell resolution 3D imaging Cancer Cell - 2019-04-15 Rios, AC; Capaldo, BD; Vaillant, F; Pal, B; van Ineveld, R; Dawson, CA; Chen, Y; Nolan, E; Fu, NY; 3DTCLSM Group,; Jackling, FC; Devi, S; Clouston, D; Whitehead, L; Smyth, GK; Mueller, SN; Lindeman, GJ; Visvader, JE
Abstract
Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer Nature Communications - 2019-02-15 Merino, D; Weber, TS; Serrano, A; Vaillant, F; Liu, K; Pal, B; Di Stefano, L; Schreuder, J; Lin, D; Chen, Y; Asselin-Labat, ML; Schumacher, TN; Cameron, D; Smyth, GK; Papenfuss, AT; Lindeman, GJ; Visvader, JE; Naik, SH
Abstract
Foxp1 is indispensable for ductal morphogenesis and controls the exit of mammary stem cells from quiescence Developmental Cell - 2018-12-03 Fu, NY; Pal, B; Chen, Y; Jackling, FC; Milevskiy, M; Vaillant, F; Capaldo, BD; Guo, F; Liu, KH; Rios, AC; Lim, N; Kueh, AJ; Virshup, DM; Herold, MJ; Tucker, HO; Smyth, GK; Lindeman, GJ; Visvader, JE
Abstract
Mutant TRP53 exerts a target gene-selective dominant-negative effect to drive tumor development Genes & Development - 2018-11-01 Aubrey, BJ; Janic, A; Chen, Y; Chang, C; Lieschke, EC; Diepstraten, ST; Kueh, AJ; Bernardini, JP; Dewson, G; O'Reilly, LA; Whitehead, L; Voss, AK; Smyth, GK; Strasser, A; Kelly, GL
Abstract
Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling Nat Commun - 2017-11-20 Pal, B; Chen, Y; Vaillant, F; Jamieson, P; Gordon, L; Rios, AC; Wilcox, S; Fu, N; Liu, KH; Jackling, FC; Davis, MJ; Lindeman, GJ; Smyth, GK; Visvader, JE
Abstract
c-Myb regulates the T-bet-dependent differentiation program in B cells to coordinate antibody responses Cell Reports - 2017-04-18 Piovesan, D; Tempany, J; Di Pietro, A; Baas, I; Yiannis, C; O'Donnell, K; Chen, Y; Peperzak, V; Belz, GT; Mackay, CR; Smyth, GK; Groom, JR; Tarlinton, DM; Good-Jacobson, KL
Abstract
Lung basal stem cells rapidly repair DNA damage using the error-prone nonhomologous end-joining pathway PLoS Biol - 2017-01 Weeden, CE; Chen, Y; Ma, SB; Hu, Y; Ramm, G; Sutherland, KD; Smyth, GK; Asselin-Labat, ML
Abstract
Differential methylation analysis of reduced representation bisulfite sequencing experiments using edgeR F1000Research - 2017 Chen, Y; Pal, B; Visvader, JE; Smyth, GK
Abstract
CXCR5+ follicular cytotoxic T cells control viral infection in B cell follicles Nature Immunology - 2016-08-03 Leong, YA; Chen, Y; Ong, HS; Wu, D; Man, K; Deleage, C; Minnich, M; Meckiff, BJ; Wei, Y; Hou, Z; Zotos, D; Fenix, KA; Atnerkar, A; Preston, S; Chipman, JG; Beilman, GJ; Allison, CC; Sun, L; Wang, P; Xu, J; Toe, JG; Lu, HK; Tao, Y; Palendira, U; Dent, AL; Landay, AL; Pellegrini, M; Comerford, I; McColl, SR; Schacker, TW; Long, HM; Estes, JD; Busslinger, M; Belz, GT; Lewin, SR; Kallies, A; Yu, D
Abstract
Deep roots for Aboriginal Australian Y chromosomes Curr Biol - 2016-03-21 Bergstrom, A; Nagle, N; Chen, Y; McCarthy, S; Pollard, MO; Ayub, Q; Wilcox, S; Wilcox, L; van Oorschot, RA; McAllister, P; Williams, L; Xue, Y; MITCHELL, RJ; Tyler-Smith, C
Abstract
It's DE-licious: a recipe for differential expression analyses of RNA-seq experiments using quasi-likelihood methods in edger Methods Mol Biol - 2016 Lun, AT; Chen, Y; Smyth, GK
Abstract
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline F1000Res - 2016 Chen, Y; Lun, AT; Smyth, GK
Abstract
Integration of microRNA signatures of distinct mammary epithelial cell types with their gene expression and epigenetic portraits Breast Cancer Research - 2015 Pal, B; Chen, Y; Bert, A; Hu, Y; Sheridan, JM; Beck, T; Shi, W; Satterley, K; Jamieson, P; Goodall, GJ; Lindeman, GJ; Smyth, GK; Visvader, JE
Abstract
Regulation of germinal center responses and B-cell memory by the chromatin modifier MOZ Proceedings of the National Academy of Sciences of the United States of America - 2014-07-01 Good-Jacobson, KL; Chen, Y; Voss, AK; Smyth, GK; Thomas, T; Tarlinton, D
Abstract
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts Genome Biology - 2014-02-03 Law, CW; Chen, Y; Shi, W; Smyth, GK
Abstract
Genome analysis of the platypus reveals unique signatures of evolution NATURE - 2008-05-08 Warren, WC; Hillier, LW; Graves, JAM; Birney, E; Ponting, CP; Grutzner, F; Belov, K; Miller, W; Clarke, L; Chinwalla, AT; Yang, SP; Heger, A; Locke, DP; Miethke, P; Waters, PD; Veyrunes, F; Fulton, L; Fulton, B; Graves, T; Wallis, J; Puente, XS; Lopez-Otin, C; Ordonez, GR; Eichler, EE; Chen, L; Cheng, Z; Deakin, JE; Alsop, A; Thompson, K; Kirby, P; Papenfuss, AT; Wakefield, MJ; Olender, T; Lancet, D; Huttley, GA; Smit, AFA; Pask, A; Temple-Smith, P; Batzer, MA; Walker, JA; Konkel, MK; Harris, RS; Whittington, CM; Wong, ESW; Gemmell, NJ; Buschiazzo, E; Jentzsch, IMV; Merkel, A; Schmitz, J; Zemann, A; Churakov, G; Kriegs, JO; Brosius, J; Murchison, EP; Sachidanandam, R; Smith, C; Hannon, GJ; Tsend-Ayush, E; McMillan, D; Attenborough, R; Rens, W; Ferguson-Smith, M; Lefevre, CM; Sharp, JA; Nicholas, KR; Ray, DA; Kube, M; Reinhardt, R; Pringle, TH; Taylor, J; Jones, RC; Nixon, B; Dacheux, JL; Niwa, H; Sekita, Y; Huang, XQ; Stark, A; Kheradpour, P; Kellis, M; Flicek, P; Chen, Y; Webber, C; Hardison, R; Nelson, J; Hallsworth-Pepin, K; Delehaunty, K; Markovic, C; Minx, P; Feng, YC; Kremitzki, C; Mitreva, M; Glasscock, J; Wylie, T; Wohldmann, P; Thiru, P; Nhan, MN; Pohl, CS; Smith, SM; Hou, SF; Renfree, MB; Mardis, ER; Wilson, RK
Abstract
Socs1 deficiency enhances hepatic insulin signaling JOURNAL OF BIOLOGICAL CHEMISTRY - 2005-09-09 Jamieson, E; Chong, MMW; Steinberg, GR; Jovanovska, V; Fam, BC; Bullen, DVR; Chen, Y; Kemp, BE; Proietto, J; Kay, TWH; Andrikopoulos, S
Abstract
Severe pancreatitis with exocrine destruction and increased islet neogenesis in mice with suppressor of cytokine signaling-1 deficiency AMERICAN JOURNAL OF PATHOLOGY - 2004-09 Chen, Y; Chong, MMW; Darwiche, R; Thomas, HE; Kay, TWH
Abstract
Suppressor of cytokine signaling-1 overexpression protects pancreatic beta cells from CD8(+) T cell-mediated autoimmune destruction JOURNAL OF IMMUNOLOGY - 2004-05-01 Chong, MMW; Chen, Y; Darwiche, R; Dudek, NL; Irawaty, W; Santamaria, P; Allison, J; Kay, TWH; Thomas, HE
Abstract

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