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Showing results for: AUTHOR - Naik, SH

Found: 30 results

Transcriptomic profiling of human pluripotent stem cell-derived retinal pigment epithelium over time Genomics Proteomics Bioinformatics - 2020-12-08 Lidgerwood, GE; Senabouth, A; Smith-Anttila, CJA; Gnanasambandapillai, V; Kaczorowski, DC; Amann-Zalcenstein, D; Fletcher, EL; Naik, SH; Hewitt, AW; Powell, JE; Pébay, A
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Dendritic cell development at a clonal level within a revised 'continuous' model of haematopoiesis Molecular Immunology - 2020-06-25 Naik, SH
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Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal Nature Communications - 2020-05-15 Lau, KX; Mason, EA; Kie, J; De Souza, DP; Kloehn, J; Tull, D; McConville, MJ; Keniry, A; Beck, T; Blewitt, ME; Ritchie, ME; Naik, SH; Zalcenstein, D; Korn, O; Su, S; Romero, IG; Spruce, C; Baker, CL; McGarr, TC; Wells, CA; Pera, MF
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A divergent transcriptional landscape underpins the development and functional branching of MAIT cells Science Immunology - 2019-11-22 Koay, HF; Su, S; Amann-Zalcenstein, D; Daley, SR; Comerford, I; Miosge, L; Whyte, CE; Konstantinov, IE; d'Udekem, Y; Baldwin, T; Hickey, PF; Berzins, SP; Mak, JYW; Sontani, Y; Roots, CM; Sidwell, T; Kallies, A; Chen, Z; Nussing, S; Kedzierska, K; Mackay, LK; McColl, SR; Deenick, EK; Fairlie, DP; McCluskey, J; Goodnow, CC; Ritchie, ME; Belz, GT; Naik, SH; Pellicci, DG; Godfrey, DI
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Interconversion between tumorigenic and differentiated states in acute myeloid leukemia Cell Stem Cell - 2019-08-01 McKenzie, MD; Ghisi, M; Oxley, EP; Ngo, S; Cimmino, L; Esnault, C; Liu, R; Salmon, JM; Bell, CC; Ahmed, N; Erlichster, M; Witkowski, MT; Liu, GJ; Chopin, M; Dakic, A; Simankowicz, E; Pomilio, G; Vu, T; Krsmanovic, P; Su, S; Tian, L; Baldwin, TM; Zalcenstein, DA; DiRago, L; Wang, S; Metcalf, D; Johnstone, RW; Croker, BA; Lancaster, GI; Murphy, AJ; Naik, SH; Nutt, SL; Pospisil, V; Schroeder, T; Wall, M; Dawson, MA; Wei, AH; de The, H; Ritchie, ME; Zuber, J; Dickins, RA
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Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia Nature Communications - 2019-06-20 Bell, CC; Fennell, KA; Chan, YC; Rambow, F; Yeung, MM; Vassiliadis, D; Lara, L; Yeh, P; Martelotto, LG; Rogiers, A; Kremer, BE; Barbash, O; Mohammad, HP; Johanson, TM; Burr, ML; Dhar, A; Karpinich, N; Tian, L; Tyler, DS; MacPherson, L; Shi, J; Pinnawala, N; Yew Fong, C; Papenfuss, AT; Grimmond, SM; Dawson, SJ; Allan, RS; Kruger, RG; Vakoc, CR; Goode, DL; Naik, SH; Gilan, O; Lam, EYN; Marine, JC; Prinjha, RK; Dawson, MA
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Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments Nature Methods - 2019-06 Tian, L; Dong, X; Freytag, S; Le Cao, KA; Su, S; JalalAbadi, A; Amann-Zalcenstein, D; Weber, TS; Seidi, A; Jabbari, JS; Naik, SH; Ritchie, ME
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Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer Nature Communications - 2019-02-15 Merino, D; Weber, TS; Serrano, A; Vaillant, F; Liu, K; Pal, B; Di Stefano, L; Schreuder, J; Lin, D; Chen, Y; Asselin-Labat, ML; Schumacher, TN; Cameron, D; Smyth, GK; Papenfuss, AT; Lindeman, GJ; Visvader, JE; Naik, SH
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Transcription factor PU.1 promotes conventional dendritic cell identity and function via induction of transcriptional regulator DC-SCRIPT Immunity - 2018-12-21 Chopin, M; Lun, AT; Zhan, Y; Schreuder, J; Coughlan, H; D'Amico, A; Mielke, LA; Almeida, FF; Kueh, AJ; Dickins, RA; Belz, GT; Naik, SH; Lew, AM; Bouillet, P; Herold, MJ; Smyth, GK; Corcoran, LM; Nutt, SL
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scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data PLoS Computational Biology - 2018-08-10 Tian, L; Su, S; Dong, X; Amann-Zalcenstein, D; Biben, C; Seidi, A; Hilton, DJ; Naik, SH; Ritchie, ME
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DiSNE movie visualization and assessment of clonal kinetics reveal multiple trajectories of dendritic cell development Cell Reports - 2018-03-06 Lin, DS; Kan, A; Gao, J; Crampin, EJ; Hodgkin, PD; Naik, SH
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Deciphering the innate lymphoid cell transcriptional program Cell Rep - 2016-10-04 Seillet, C; Mielke, LA; Amann-Zalcenstein, DB; Su, S; Gao, J; Almeida, FF; Shi, W; Ritchie, ME; Naik, SH; Huntington, ND; Carotta, S; Belz, GT
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Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system BMC Syst Biol - 2016 Weber, TS; Dukes, M; Miles, DC; Glaser, SP; Naik, SH; Duffy, KR
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Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells BMC Bioinformatics - 2016 Beltman, JB; Urbanus, J; Velds, A; van Rooij, N; Rohr, JC; Naik, SH; Schumacher, TN
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Editorial: Dendritic Cell and Macrophage Nomenclature and Classification Front Immunol - 2016 Ginhoux, F; Guilliams, M; Naik, SH
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Towards defining a 'lineage'-the case for dendritic cells Semin Cell Dev Biol - 2015-05 Perie, L; Naik, SH
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Cellular barcoding: a technical appraisal Exp Hematol - 2014-08 Naik, SH; Schumacher, TN; Perie, L
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Dendritic cells, monocytes and macrophages: a unified nomenclature based on ontogeny. Nature Reviews Immunology - 2014-08 Guilliams, M; Ginhoux, F; Jakubzick, C; Naik, SH; Onai, N; Schraml, BU; Segura, E; Tussiwand, R; Yona, S
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Lymphoid tissue and plasmacytoid dendritic cells and macrophages do not share a common macrophage-dendritic cell-restricted progenitor. Immunity - 2014-07-17 Sathe, P; Metcalf, D; Vremec, D; Naik, SH; Langdon, WY; Huntington, ND; Wu, L; Shortman, K
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Determining lineage pathways from cellular barcoding experiments Cell Reports - 2014-02-15 Perie, L; Hodgkin, PD; Naik, SH; Schumacher, TN; de Boer, RJ; Duffy, KR
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Diverse and heritable lineage imprinting of early haematopoietic progenitors NATURE - 2013-04-11 Naik, SH; Perie, L; Swart, E; Gerlach, C; van Rooij, N; de Boer, RJ; Schumacher, TN
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Dendritic cells in the thymus contribute to T-regulatory cell induction PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA - 2008-12-16 Proietto, AI; van Dommelen, S; Zhou, PH; Rizzitelli, A; D'Amico, A; Steptoe, RJ; Naik, SH; Lahoud, MH; Liu, Y; Zheng, P; Shortman, K; Wu, L
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Normal proportion and expression of maturation markers in migratory dendritic cells in the absence of germs or Toll-like receptor signaling IMMUNOLOGY AND CELL BIOLOGY - 2008-02 Wilson, NS; Young, LJ; Kupresanin, F; Naik, SH; Vremec, D; Heath, WR; Akira, S; Shortman, K; Boyle, J; Maraskovsky, E; Belz, GT; Villadangos, JA
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Differential development of murine dendritic cells by GM-CSF versus flt3 ligand has implications for inflammation and trafficking JOURNAL OF IMMUNOLOGY - 2007-12-01 Xu, YK; Zhan, YF; Lew, AM; Naik, SH; Kershaw, MH
Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo NATURE IMMUNOLOGY - 2007-11 Naik, SH; Sathe, P; Park, HY; Metcalf, D; Proietto, AI; Dakic, A; Carotta, S; O'Keeffe, M; Bahlo, M; Papenfuss, A; Kwak, JY; Wu, L; Shortman, K
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