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Showing results for: AUTHOR - Speed, TP

Found: 182 results

Finding a suitable library size to call variants in RNA-Seq BMC Bioinformatics - 2020-12-01 Quaglieri, A; Flensburg, C; Speed, TP; Majewski, IJ
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Serum microRNA is a biomarker for post-operative monitoring in glioma Journal of Neurooncology - 2020-09-11 Morokoff, A; Jones, J; Nguyen, H; Ma, C; Lasocki, A; Gaillard, F; Bennett, I; Luwor, R; Stylli, S; Paradiso, L; Koldej, R; Paldor, I; Molania, R; Speed, TP; Webb, A; Infusini, G; Li, J; Malpas, C; Kalincik, T; Drummond, K; Siegal, T; Kaye, AH
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Removing unwanted variation with CytofRUV to integrate multiple CyTOF datasets Elife - 2020-09-07 Trussart, M; Teh, CE; Tan, T; Leong, L; Gray, DH; Speed, TP
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Strategies to enable large-scale proteomics for reproducible research Nature Communications - 2020-07-30 Poulos, RC; Hains, PG; Shah, R; Lucas, N; Xavier, D; Manda, SS; Anees, A; Koh, JMS; Mahboob, S; Wittman, M; Williams, SG; Sykes, EK; Hecker, M; Dausmann, M; Wouters, MA; Ashman, K; Yang, J; Wild, PJ; DeFazio, A; Balleine, RL; Tully, B; Aebersold, R; Speed, TP; Liu, Y; Reddel, RR; Robinson, PJ; Zhong, Q
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Changes in ferrous iron and glutathione promote ferroptosis and frailty in aging Caenorhabditis elegans Elife - 2020-07-21 Jenkins, NL; James, SA; Salim, A; Sumardy, F; Speed, TP; Conrad, M; Richardson, DR; Bush, AI; McColl, G
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Multiple sclerosis risk variants regulate gene expression in innate and adaptive immune cells Life Science Alliance - 2020-07 Gresle, MM; Jordan, MA; Stankovich, J; Spelman, T; Johnson, LJ; Laverick, L; Hamlett, A; Smith, LD; Jokubaitis, VG; Baker, J; Haartsen, J; Taylor, B; Charlesworth, J; Bahlo, M; Speed, TP; Brown, MA; Field, J; Baxter, AG; Butzkueven, H
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scClassify: sample size estimation and multiscale classification of cells using single and multiple reference Molecular Systems Biology - 2020-06 Lin, Y; Cao, Y; Kim, HJ; Salim, A; Speed, TP; Lin, DM; Yang, P; Yang, JYH
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DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data Bioinformatics - 2019-12-15 Ye, C; Speed, TP; Salim, A
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Identification of cancer sex-disparity in the functional integrity of p53 and its X chromosome network Nature Communications - 2019-11-26 Haupt, S; Caramia, F; Herschtal, A; Soussi, T; Lozano, G; Chen, H; Liang, H; Speed, TP; Haupt, Y
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A new normalization for Nanostring nCounter gene expression data Nucleic Acids Research - 2019-07 Molania, R; Gagnon-Bartsch, JA; Dobrovic, A; Speed, TP
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Using long-read sequencing to detect imprinted DNA methylation Nucleic Acids Research - 2019-05-07 Gigante, S; Gouil, Q; Lucattini, A; Keniry, A; Beck, T; Tinning, M; Gordon, L; Woodruff, C; Speed, TP; Blewitt, ME; Ritchie, ME
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scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets Proceedings of the National Academy of Sciences of the United States of America - 2019-04-26 Lin, Y; Ghazanfar, S; Wang, KYX; Gagnon-Bartsch, JA; Lo, KK; Su, X; Han, ZG; Ormerod, JT; Speed, TP; Yang, P; Yang, JYH
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Maps of variability in cell lineage trees PLoS Computational Biology - 2019-02-12 Hicks, DG; Speed, TP; Yassin, M; Russell, SM
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Dysregulated IL-1beta-GM-CSF axis in acute rheumatic fever that is limited by hydroxychloroquine Circulation - 2018-12-04 Kim, ML; Martin, WJ; Minigo, G; Keeble, JL; Garnham, AL; Pacini, G; Smyth, GK; Speed, TP; Carapetis, J; Wicks, IP
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Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements Bioinformatics - 2018-08-01 Peters, TJ; French, HJ; Bradford, ST; Pidsley, R; Stirzaker, C; Varinli, H; Nair, S; Qu, W; Song, J; Giles, KA; Statham, AL; Speirs, H; Speed, TP; Clark, SJ
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The healthy ageing gene expression signature for Alzheimer's disease diagnosis: a random sampling perspective Genome Biology - 2018-07-25 Jacob, L; Speed, TP
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Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis Nature Medicine - 2018-07 Savas, P; Virassamy, B; Ye, C; Salim, A; Mintoff, CP; Caramia, F; Salgado, R; Byrne, DJ; Teo, ZL; Dushyanthen, S; Byrne, A; Wein, L; Luen, SJ; Poliness, C; Nightingale, SS; Skandarajah, AS; Gyorki, DE; Thornton, CM; Beavis, PA; Fox, SB; Kathleen Cuningham Foundation Consortium for Research into Familial Breast, Cancer; Darcy, PK; Speed, TP; Mackay, LK; Neeson, PJ; Loi, S
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Correction to: A statistical framework for analyzing deep mutational scanning data Genome Biol - 2018-02-07 Rubin, AF; Gelman, H; Lucas, N; Bajjalieh, SM; Papenfuss, AT; Speed, TP; Fowler, DM
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Accurate RNA sequencing from formalin-fixed cancer tissue to represent high-quality transcriptome from frozen tissue JCO Precision Oncology - 2018-01-26 Li, J; Fu, C; Speed, TP; Wang, W; Symmans, WF
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RLE plots: Visualizing unwanted variation in high dimensional data PLoS One - 2018 Gandolfo, LC; Speed, TP
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Joint modeling of mixed Plasmodium species infections using a bivariate Poisson lognormal model Am J Trop Med Hyg - 2018-01 Colborn, KL; Mueller, I; Speed, TP
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GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly Genome Res - 2017-11-02 Cameron, DL; Schroder, J; Penington, JS; Do, H; Molania, R; Dobrovic, A; Speed, TP; Papenfuss, AT
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A statistical framework for analyzing deep mutational scanning data Genome Biol - 2017-08-07 Rubin, AF; Gelman, H; Lucas, N; Bajjalieh, SM; Papenfuss, AT; Speed, TP; Fowler, DM
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Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells Science - 2017-02-10 Choi, YJ; Lin, CP; Risso, D; Chen, S; Kim, TA; Tan, MH; Li, JB; Wu, Y; Chen, C; Xuan, Z; Macfarlan, T; Peng, W; Lloyd, KC; Kim, SY; Speed, TP; He, L
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Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex BMC Genomics - 2016-10-25 Gerstner, JR; Koberstein, JN; Watson, AJ; Zapero, N; Risso, D; Speed, TP; Frank, MG; Peixoto, L
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